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Insights from Comparison of the Renal and Skin Single Cell Transcriptomes in Lupus Nephritis

Evan DerHemant SuryawanshiPavel MorozovManjunath KustagiBeatrice GoilavSaritha RanabathouPeter IzmirlyRobert ClancyH. Michael BelmontMordecai KoenigsbergMichelle MokrzyckiHelen RominiekiJay GrahamJuan RoccaNicole BornkampNicole Jordan, Emma SchulteMing WuJames PullmanKamil SlowikowskiSoumya RaychaudhuriJoel GuthridgeJudith JamesAcclerating Medicine Partnership (AMP)Jill BuyonThomas TuschlChaim Putterman

From https://www.biorxiv.org/content/early/2018/08/01/382846

The immune cell landscape in kidneys of lupus nephritis patients

Arnon AraziDeepak A. RaoCeline C. BerthierAnne DavidsonYanyan LiuPaul J. HooverAdam ChicoineThomas M. EisenhaureA. Helena JonssonShuqiang LiDavid J. LiebEdward P. BrowneAkiko NomaDanielle SutherbyScott SteelmanDawn E. SmilekPatti TostaWilliam ApruzzeseElena MassarottiMaria Dall’EraMeyeon ParkDiane L. KamenRichard A. FurieFernanda Payan-SchoberJill P. BuyonMichelle A. PetriChaim PuttermanKenneth C. KalunianE. Steve WoodleJames A. LedererDavid A. HildemanChad NusbaumDavid WofsyMatthias KretzlerJennifer H. AnolikMichael B. BrennerThe Accelerating Medicines Partnership in RA/SLE networkNir HacohenBetty Diamond

From https://www.biorxiv.org/content/early/2018/07/07/363051

Defining Inflammatory Cell States in Rheumatoid Arthritis Joint Synovial Tissues by Integrating Single-cell Transcriptomics and Mass Cytometry

Fan ZhangKevin WeiKamil SlowikowskiChamith Y. FonsekaDeepak A. RaoStephen KellySusan M. GoodmanDarren TabechianLaura B. HughesKaren Salomon-EscotoGerald F. M. WattsWilliam ApruzzeseDavid J. LiebDavid L. BoyleArthur M. Mandelin IIAccelerating Medicines Partnership: RA Phase 1AMP RA/SLEBrendan F. BoyceEdward DiCarloEllen M. GravallesePeter K. GregersenLarry MorelandGary S. FiresteinNir HacohenChad NusbaumJames A. LedererHarris PerlmanCostantino PitzalisAndrew FilerV. Michael HolersVivian P. BykerkLaura T. DonlinJennifer H. AnolikMichael B. BrennerSoumya Raychaudhuri

From https://www.biorxiv.org/content/early/2018/06/20/351130

Methods for high-dimensonal analysis of cells dissociated from cyropreserved synovial tissue.

Donlin LT,, Rao DA, Wei K, Slowikowski K,, McGeachy MJ, Turner JD, Meednu N, Mizoguchi F, Gutierrez-Arcelus M,, Lieb DJ, Keegan J, Muskat K, Hillman J, Rozo C, Ricker E,, Eisenhaure TM, Li S, Browne EP, Chicoine A, Sutherby D, Noma A; Accelerating Medicines Partnership RA/SLE Network, Nusbaum C, Kelly S, Pernis AB,, Ivashkiv LB,, Goodman SM,, Robinson WH, Utz PJ, Lederer JA, Gravallese EM, Boyce BF, Hacohen N,, Pitzalis C, Gregersen PK, Firestein GS, Raychaudhuri S, Moreland LW, Holers VM, Bykerk VP,, Filer A, Boyle DL, Brenner MB, Anolik JH.

From https://www.ncbi.nlm.nih.gov/pubmed/29996944

High dimensional analyses of cells dissociated from cryopreserved synovial tissue

Laura T. Donlin, Deepak A. Rao, Kevin Wei, Kamil Slowikowski, Mandy J. McGeachy, Jason D. Turner, Nida Meednu, Fumitaka Mizoguchi, Maria Gutierrez-Arcelus, David J. Lieb, Joshua Keegan, Kaylin Muskat, Joshua Hillman, Cristina Rozo, Edd Ricker, Thomas M. Eisenhaure, Shuqiang Li, Edward P. Browne, Adam Chicoine, Danielle Sutherby, Akiko Noma, Accelerating Medicines Partnership: RA/SLE Network, Chad Nusbaum, Stephen Kelly0, Alessandra B. Pernis, Lionel B. Ivashkiv, Susan M. Goodman, William H. Robinson, Paul J. Utz, James A. Lederer, Ellen M. Gravallese, Brendan F. Boyce, Nir Hacohen, Costantino Pitzalis, Peter K. Gregersen, Gary S. Firestein, Soumya Raychaudhuri, Larry W. Moreland, V. Michael Holers, Vivian P. Bykerk, Andrew Filer, David L. Boyle, Michael B. Brenner, Jennifer H. Anolik,

From https://www.biorxiv.org/content/early/2018/03/19/284844

A protocol for single-cell transcriptomics from cryopreserved renal tissue and urine for the Accelerating Medicine Partnership (AMP) RA/SLE network

Deepak A. RaoCeline C BerthierArnon AraziAnne DavidsonYanyan LiuEdward P. BrowneThomas M. EisenhaureAdam ChicoineDavid J. LiebDawn E. SmilekPatti TostaJames A. LedererMichael B. BrennerDavid HildemanE. Steve WoodleDavid WofsyJennifer H. AnolikMatthias KretzlerAccelerating Medicines Partnership RA/SLE NetworkNir HacohenBetty Diamond.

Machine learning integration of rheumatoid arthritis synovial histology and RNAseq data identifies three disease subtypes.

Orange DE, Agius P, DiCarlo EF, Robine N, Geiger H, Szymonifka J, McNamara M, Cummings R, Andersen KM, Mirza S, Figgie M, Ivashkiv L, Pernis AB, Jiang C, Frank M, Darnell R, Lingampali N, William R, Gravallese E, Bykerk VP, Goodman SM, Donlin LT; Accelerating Medicine Partnership: RA/SLE Network

From https://www.ncbi.nlm.nih.gov/m/pubmed/29468833/

Single cell RNA sequencing to dissect the molecular heterogeneity in lupus nephritis

Evan Der, Saritha Ranabothu, Hemant Suryawanshi, Kemal M. Akat, Robert Clancy, Pavel Morozov, Manjunath Kustagi, Mareike Czuppa, Peter Izmirly, H. Michael Belmont, Tao Wang, Nicole Jordan, Nicole Bornkamp, Janet Nwaukoni, July Martinez, Beatrice Goilav, Jill P. Buyon, Thomas Tuschl, and Chaim Putterman

From https://insight.jci.org/articles/view/93009

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